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Transcriptome sequencing and phylogenetic analysis of four species of luminescent beetles
WANG Kai,HONG Wei,JIAO Hengwu,ZHAO Huabin * #
College of Life Sciences, Wuhan University, Wuhan 430072
*Correspondence author
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Funding: The Specialized Research Fund for the Doctoral Program of Higher Education (No.20130141110066), the National Natural Science Foundation of China(No.91331115)
Opened online: 2 May 2017
Accepted by: none
Citation: WANG Kai,HONG Wei,JIAO Hengwu.Transcriptome sequencing and phylogenetic analysis of four species of luminescent beetles[OL]. [ 2 May 2017] http://en.paper.edu.cn/en_releasepaper/content/4727609
 
 
The evolution of bioluminescence has prompted scientific attention to illuminate phylogenetic relationships of luminescent beetles. However, genomic resources are virtually lacking in rhagophthalmids (Rhagophthalmidae) and their related firefly beetles lampyrids (Lampyridae). Here, we employed the Illumina Hiseq 2000 platform and sequenced the whole-body transcriptomes of the four luminescent beetles: one rhagophthalmid (Rhagophthalmus sp.) and three fireflies (Asymmetricata circumdata, Aquatica ficta, and Pyrocoelia pectoralis). We obtained 55.4, 43.4, 38.6, and 36.7 million clean reads for the four species, respectively. All reads were assembled into contigs from which unigenes were derived. All unigenes were annotated by publicly available databases, and a total of 4325 orthologous genes were identified. Using multiple phylogenetic approaches, our transcriptome data confirmed the distinctiveness of Rhagophthalmidae from Lampyridae. Together, this study is the first report of whole transcriptome sequencing data in Rhagophthalmidae and Lampyridae species, representing a valuable genomic resource for studying the origin and evolution of some remarkable traits in these beetles such as bioluminescence. Moreover, our transcriptome data provide useful phylogenetic information that could be of importance in future studies of phylogenetic inference.
Keywords:Rhagophthalmidae, Lampyridae, Phylogenomics, Transcriptome
 
 
 

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